BranchestERABLE

class BranchestERABLE(bin_fp='_erable', cache_dir=None)[source]

Branch estimator for phylogenetic trees.

ERaBLE phylogenetic tree estimator on fixed tree topology. Binet et al. [BGS+16]

Parameters

  • bin_fp (Optional[str]) – Path to ‘erable’ executable or None for default.

  • cache_dir (Optional[str]) – Cache directory to use or None for seamless caching.

Attributes

last_error

Latest Error.

last_out

Lastest Output.

last_rates

Latest Rates Product.

Methods

estimate(alignment, tree, **kwargs)

Estimate branches of on fixed tree topology(param tree) using MSA of representative sequences(param alignment)