PhyloMAF (pmaf)

Phylogenetic Microbiome Analysis Framework

PhyloMAF is a novel comprehensive microbiome data analysis tool based on Python programming language. With memory efficient and extensible design, PhyloMAF have wide range of applications including but not limited to: post OTU picking microbiome data analysis, microbiome data meta-analysis, taxonomy based reference phylogenetic tree pruning and reconstruction, cross database data validation, primer design by taxonomic ranks, heterogeneous data retrieval from different databases including remote mega-databases like NCBI or Ensembl.

Currently available packages and modules

• Alignment (pmaf.alignment)
• Biome (pmaf.biome)
• Database (pmaf.database)
• Internals (pmaf.internal)
• Phylo (pmaf.phylo)
• Pipe (pmaf.pipe)
• Remote (pmaf.remote)
• Sequence (pmaf.sequence)