estimate

BranchestERABLE.estimate(alignment, tree, **kwargs)

Estimate branches of on fixed tree topology(param tree) using MSA of representative sequences(param alignment)

Parameters

• alignment (pmaf.sequence._metakit.MultiSequenceMetabase) – MSA alignment of representative sequences

• tree (pmaf.phylo.tree._tree.PhyloTree) – Phylogenetic tree topology.

• kwargs (Any) – Compatibility

Returns

Return type

Phylogenetic tree with estimated branches