get_taxonomy_by_rid

DatabaseGreengenes.get_taxonomy_by_rid(ids=None, levels=None, tax_format=None)

Make taxonomy dataframe for given tids.

Parameters

• ids (Optional[Union[Sequence[Union[str, int]], numpy.ndarray, pandas.core.indexes.base.Index, str, int]]) – Target tids or None for all

• levels (Optional[Union[str, Sequence[str]]]) – Taxonomy rank(s) for which to generate taxonomy dataframe

• tax_format (Optional[str]) – Format taxonomy values # TODO: test and add examples

Returns

Return type

Taxonomy data as DataFrame