get_alignment_by_rid

DatabaseGreengenes.get_alignment_by_rid(ids=None, iterator=True, like='multiseq', chunksize=300)

Get representative alignments for rids

Parameters

• ids (Optional[Union[Sequence[Union[str, int]], numpy.ndarray, pandas.core.indexes.base.Index, str, int]]) – Target rids

• iterator (bool) – Whether to produce chunked generator. Default is True

• like (str) – Result type can be ‘multiseq’(default), ‘stream’, ‘asis’, ‘seqlist’ or ‘tuples’.

• chunksize (int) – Chunk size. Default 300 records per chunk.

Returns

Return type

Depends on like parameter.