get_tree¶

DockerPhylogenyMedium.get_tree(indices=None, exclude_missing=False)[source]¶

Get the phylogenetic tree instance.

Parameters

indices (Optional[numpy.ndarray]) – Target indices or None for all
exclude_missing (bool) – Exclude missing data

Returns

If docker is singleton then return the PhyloTree
if not singleton then return dictionary with values get_tree()

Return type

Union[pmaf.phylo.tree._tree.PhyloTree, Dict[Union[str, int], Optional[pmaf.phylo.tree._tree.PhyloTree]]]