pmaf.pipe.agents.dockers

Data Dockers (pmaf.pipe.agents.dockers)

This sub-package dockers contains classes for transitional data management called docker instances. Any instance of docker can be seen as a temporary data dock that is understood by mediators and miners.

Dockers (Classes)

DockerAccessionMedium(accessions, **kwargs)

The docker class responsible for handling accession numbers.

DockerIdentifierMedium(identifiers, **kwargs)

The docker class responsible for handling any kind of identifiers.

DockerPhylogenyMedium(trees[, ignore_tips])

The docker class responsible for handling phylogeny data.

DockerSequenceMedium(sequences[, mode, aligned])

The docker class responsible for handling sequence data.

DockerTaxonomyMedium(taxonomy, **kwargs)

The docker class responsible for handling taxonomy data.