get_alignment_by_rid

DatabaseSILVA.get_alignment_by_rid(ids=None, iterator=True, like='multiseq', chunksize=300)

Get representative alignments for rids

Parameters

  • ids (Optional[Union[Sequence[Union[str, int]], numpy.ndarray, pandas.core.indexes.base.Index, str, int]]) – Target rids

  • iterator (bool) – Whether to produce chunked generator. Default is True

  • like (str) – Result type can be ‘multiseq’(default), ‘stream’, ‘asis’, ‘seqlist’ or ‘tuples’.

  • chunksize (int) – Chunk size. Default 300 records per chunk.

Returns

Return type

Depends on like parameter.