get_lineage_by_tid

DatabaseGTDB.get_lineage_by_tid(ids=None, missing_rank=False, desired_ranks=False, drop_ranks=False)

Generates lineages for tids

Parameters

• ids (Optional[Union[Sequence[Union[str, int]], numpy.ndarray, pandas.core.indexes.base.Index, str, int]]) – Target tids

• missing_rank (bool) – Whether to add missing ranks

• desired_ranks (Union[Sequence[str], bool]) – Limiting ranks

• drop_ranks (Union[Sequence[str], bool]) – Drop ranks by marking the missing.

Returns

Return type

pd.Series with taxonomic lineages.