All modules for which code is available
- pmaf.alignment._multiple._aligners
- pmaf.biome.assembly._assembly
- pmaf.biome.essentials._frequency
- pmaf.biome.essentials._repsequence
- pmaf.biome.essentials._samplemeta
- pmaf.biome.essentials._taxonomy
- pmaf.biome.essentials._tree
- pmaf.biome.survey._survey
- pmaf.database._manager
- pmaf.database._manifest._greengenes
- pmaf.database._manifest._gtdb
- pmaf.database._manifest._otl
- pmaf.database._manifest._silva
- pmaf.database._manifest._unite
- pmaf.internal.io._seq
- pmaf.phylo.branchest._erable._erable
- pmaf.phylo.branchest._fasttree2._fasttree2
- pmaf.phylo.builders._fasttree2._fasttree2
- pmaf.phylo.tree._tree
- pmaf.pipe.agents.dockers._mediums._acs_medium
- pmaf.pipe.agents.dockers._mediums._id_medium
- pmaf.pipe.agents.dockers._mediums._phy_medium
- pmaf.pipe.agents.dockers._mediums._seq_medium
- pmaf.pipe.agents.dockers._mediums._tax_medium
- pmaf.pipe.agents.mediators._local._components._acs_mixin
- pmaf.pipe.agents.mediators._local._components._phy_mixin
- pmaf.pipe.agents.mediators._local._components._seq_mixin
- pmaf.pipe.agents.mediators._local._components._tax_mixin
- pmaf.pipe.agents.mediators._local._local_mediator
- pmaf.pipe.agents.mediators._remote._ncbi
- pmaf.pipe.agents.miners._miner
- pmaf.pipe.factors._inventory._factor_16S
- pmaf.pipe.markers._marker
- pmaf.remote._entrez._entrez
- pmaf.sequence._multiple._multiple
- pmaf.sequence._sequence._nucleotide